Scaffold Ga0209596_1018095

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1018095
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4319
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F014488	Metagenome	262	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10180951	F014488	N/A	MNHQGQDPADSILASYTPDMAEHIDTLQDRVKERLARMQAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDESLLALATNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRRQECPK
Ga0209596_101809510	F033350	AGGAGG	MSAVDVEVPQTKWSMLVWKTIKEKPYNDEKVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0209596_10180953	F024265	AGTAG	MNEPFTSSEAKAKGILSYRYPGKEMAKLYAENRNQATIDMLRDAVFTLITNEIPTCTIAQVLRKTHGAIQYHLRFLEGDGKLKRRNKRCHWREAVEA
Ga0209596_10180957	F010463	AGGCGG	VIAHPQELVLAATIHRVKSCEERIAQFEQMVSTLTAQMAQNRTELASKGLANLVMGTTIPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSTGRATK