NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1015413

Scaffold Ga0209596_1015413


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1015413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4787
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F013892Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10154131F002245N/AVPHTIVFEAIIDLDKIPAKLLPTLIALDKEAITQMCKEATLHALSLSNVLPLANDNNTWAEVSIKEGN
Ga0209596_101541310F001043N/AMNQQGIQGDNVSDYKDGFDDGYKFAREEMMEKLSEIDILDIDSWILDRLCEMIEGGKL
Ga0209596_101541312F013892AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQIVGEDWTQETGWGLSVNRILDNEHKVPVIDWAEQ
Ga0209596_10154133F004051AGGAMTIDNKVYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLQDKLA
Ga0209596_10154138F000980GGAMSVAPATILFMTNELVSTKYTFACDPDNCDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVNATIAPTTQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASIEWALHNGRQAQKHNGVLSGKIDTVKDIITEAYADSDDQETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDFDLESEVTDALYADSNNGNIQIDDTEVCNVRES
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Institute for Fundamental Biomedical Research
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