Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1014312 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1014312 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5032
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5032

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F030060	Metagenome	186	N
F079581	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10143122	F030060	GGCGG	MTKGVIDSEAPQIHWEHLNVKGGRVLDLGCGFWTEAERQEGNGTAKYFLSQNPEFYMGIDINQGDIESLSRQYPEGKFLCQRIESSEQIQRLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFMAWFESIGFECYQYDSVSFCSEISVIYGRLKC
Ga0209596_10143124	F008741	GGA	MIAKTIKYSQRLGDVLRCLPATKFLADQGHEVFFDCFPQYHSVFDLVSYVKVGSKGDVIDLEIWPNKYEEYRKSKKTWTDFVYSHPEIKGADKTNIVLDKLDDKPPKGLPENYNLVAPFGISQGHYNNPLEIITRARAEMGKENFYVLCPTDIKIQGLDTYTASSVEQMAKAIRGADMFWAINSTPIVLASAVRRDKNTGFFPQKNEWETDNIFDFEGMIKLD
Ga0209596_10143125	F005584	GGA	VGFMAGSIDTTYFLSDLSGMIKDLYSSVTGLGSNAVCASVTDLTTATDLDVGGEILRITQSLVVPVSSISAPTIGMLCSVSGVERMVAGFSQSVDGVSYTLELADITT
Ga0209596_10143127	F079581	AGG	LEQKYNARHYSNGKEMNQTPQFNVEDAIADLLIGVAGLHTYTTNRTGLRFFPFVTISASVNEQMLGNYTGVYDMSVVVNYSDTAAKISQENFDSEYCAIFEAFYSETPTLATKIQNTILDTKIHMARISSQSPSIRANKRAWQRGLTISVICTPSELDDGIRYLDFSEPRNSMYVGVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1014312

Overview

Ecosystem & Geography

Associated Families

Sequences