NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1013973

Scaffold Ga0209596_1013973


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1013973 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5115
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F041191Metagenome160Y
F042157Metagenome158N
F049410Metagenome146N
F062749Metagenome130Y
F071219Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_101397310F049410N/AMTRNTRYTNGKEVITFSKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWEII
Ga0209596_101397312F042157N/AMKLKQKYHAPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLITLKQAFWGGLAATFLLINTKFLTKFTTETPTANAVIDGDGC
Ga0209596_101397314F071219N/AMTPHSTDNSIPVIITSITLQAGVWMSDWFGNLNLLGISESFYEFAKIGALLISMWASYRVAIKNKPDDKPRDK
Ga0209596_10139732F062749N/AMKTKASLILWAVAALFMSFWAVSFAMTGVNFGNSEFITFTLSFCASLVSAVCGAGFMQQWMKR
Ga0209596_10139733F041191GGAMRLLWNPTNLTCEFIVPNIDKSDGVQKVIGFSRGWHHWNSIRLGIRKENDYCVLYFYAYIKGERTIQRIGRYEIGDLVKCELNWGSYIECKANDGYAFRVAPRHSLPIGYQLYSYAEKDGVEGVKIDIDIEINNLEII
Ga0209596_10139734F008546N/AMKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDKHWMGMVMMAAINPFLCLPMNHYTIEVKTFKGRSIIALAFSTGFVVGILTIRPFFI
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