NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1011737

Scaffold Ga0209596_1011737


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1011737 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5716
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F005846Metagenome388Y
F011284Metagenome292N
F027777Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_101173711F027777AGGAMSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDEGQHKQ
Ga0209596_10117375F011284AGCAGMTLEQGVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPL
Ga0209596_10117378F005846N/AMTSFPLPARPQASAVPAWHIEFKKETAIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYVERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINWIWEEMNFQNNRAGEVVWEGFVMKSLDDGKYPYITNPSYCSPAWQKQRIRW
Ga0209596_10117379F005702GGAVIIFLVVFFGLLILQGVRIFAKHIDQQNYDRRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPSKNWVGRN

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