Scaffold Ga0209596_1011703

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1011703
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5727
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F029754	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10117031	F029754	N/A	MSCNTVTFKRGTNFGSSTVFTPEAPPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDT
Ga0209596_101170310	F001298	N/A	NSGAITFSCLISDPAVMTVLEAGGYCERTQYSVRLPAVTASWSLPDGSTGSSAALLSGGVPIASLAQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ
Ga0209596_10117037	F001725	N/A	VAAISNGTVCLYAISGTVTNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSEITIEGICKTSTMPVLGVALSFTLNAATAYPSGSASVSFTGTITKIDEKGSNKGFTAVTVTAIDYEGITPV