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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1010307 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6239 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008811 | Metagenome / Metatranscriptome | 327 | N |
| F012447 | Metagenome | 280 | Y |
| F014609 | Metagenome | 261 | Y |
| F018353 | Metagenome | 235 | N |
| F030061 | Metagenome | 186 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_10103071 | F030061 | N/A | DLKTALTSNTNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALTNLENDIETILGLIPLNYIILSVSSPRIRQTNSTDLLTAEIQLQTAYTG |
| Ga0209596_101030711 | F018353 | N/A | MSKPKAKKQSIELPDVMASELVRIVNTAHEEGKLIVGFVACLELFDGKKKTIKIVANQDMPQHSIFGIINFAAEKYQFTISPDEDEDDDFYDPNWFDGQ |
| Ga0209596_101030712 | F014609 | N/A | MINELIGIIGLLVTILVLIIRATAEITKMKSQLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR |
| Ga0209596_10103072 | F008811 | AGGA | MATTILSGRQVKITIGGVEYSEQILNSAMNFATERLTFDTLAGKAFKYIDSNVTLDLTFLNDSGETVSLYKALWNATESAPDTALAFIFLTQTGVSFTGTVLPVYPSISATGADAQQCSVSLQVVGIPTEDLTK |
| Ga0209596_10103074 | F012447 | GGA | MAKAISLVPVDKDYRALLRAFGKMDDIAKNDMKQIAANLAERGAAYAQGSASRSPYNPKQAVAVAQSIKVSKSDKAPSFSIGGSRKVGSSAFSAGYVIMGNEFGSKQYKQFPKRSPQGGKKGWWLYQAMSRFQPTISKEWLEGFEKVRDAWIGRL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |