Scaffold Ga0209596_1010064

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1010064
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6338
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F012573	Metagenome / Metatranscriptome	279	Y
F019827	Metagenome / Metatranscriptome	227	Y
F028170	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_101006416	F028170	N/A	MALKKLMKGLESSLKKEREIHPSTKLGVWFHNFKMRSIEYRINDIKKELSNRKTKK
Ga0209596_10100642	F012573	N/A	MSNQTNGWMEKLAKSYKLPEEQPKEKKQPVSLLKESQLHIIMGRDKKDLVKKK
Ga0209596_10100644	F019827	N/A	MRDVLIGTKRKPYSSSRVRKMRSERLLTKAKKEGVTNDQVQHYLGKLQAAGHMRLGGMTSFDVKSERSPNELSENHINTTTIRFNTVVEKGMGEKPHMVGYLTSASDVDSKYKLKGWFNEDGTFRIELVN
Ga0209596_10100648	F010321	GGAG	MTFEELQLNELERYNNALVSQSLQPEDIKQMNRKMFNPKTGELQLLVDNGKGGVKMAAVNIFE