NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1010064

Scaffold Ga0209596_1010064


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1010064 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6338
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010321Metagenome / Metatranscriptome305Y
F012573Metagenome / Metatranscriptome279Y
F019827Metagenome / Metatranscriptome227Y
F028170Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_101006416F028170N/AMALKKLMKGLESSLKKEREIHPSTKLGVWFHNFKMRSIEYRINDIKKELSNRKTKK
Ga0209596_10100642F012573N/AMSNQTNGWMEKLAKSYKLPEEQPKEKKQPVSLLKESQLHIIMGRDKKDLVKKK
Ga0209596_10100644F019827N/AMRDVLIGTKRKPYSSSRVRKMRSERLLTKAKKEGVTNDQVQHYLGKLQAAGHMRLGGMTSFDVKSERSPNELSENHINTTTIRFNTVVEKGMGEKPHMVGYLTSASDVDSKYKLKGWFNEDGTFRIELVN
Ga0209596_10100648F010321GGAGMTFEELQLNELERYNNALVSQSLQPEDIKQMNRKMFNPKTGELQLLVDNGKGGVKMAAVNIFE

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