Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1007610 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1007610 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7621
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7621

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (80.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001460	Metagenome / Metatranscriptome	690	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y
F023344	Metagenome / Metatranscriptome	210	Y
F060917	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100761019	F060917	AGAAGG	MIDWLVNRMFRWDTLRHAIFDEVHLYDHLDTIVNDPEGMKIASSSWMEGDTWYGWNYNSKKNRYYFDDIGNKSLIGLWEDQWLRETDTAEIK
Ga0209596_10076102	F023344	AGGCGG	MEPFTDTVGEHILGAIQVDIEQHLFEQWNDKNLDEGSEYAEWQFMSFAPDNLKQSYNEYYGLKEKDEFYLC
Ga0209596_100761020	F020166	GAG	MREPKIMKMDWRSLGYWPVYKDGKLTWEKDPEKND
Ga0209596_100761023	F021988	N/A	MSNFKKDDGTGMVTPPTGGAPAGAVTSREAAKKYPKQGMKVDRNKHGIRRETSLIPKPPKKSGRKKV
Ga0209596_100761024	F001280	GAGG	MCTECGCNIFGMAYMEPVTIVDASRDGDSGLTLDMSSTPEQTRQFINE
Ga0209596_10076103	F001460	AGGA	MLGYTKDDLDRMTNAVHDAKLFYLRTPSDLMDKTELRKDLEDTVSFLQGLWAEGYFD
Ga0209596_10076106	F000263	AGG	MNAEDIGLPPHLQRLVNYGVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMERTRCEGALDTLVDIYNLTYQLSFAIGERTL
Ga0209596_10076108	F000441	AGAAG	MSDNYLNDQLDTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLT
Ga0209596_10076109	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALAEAVTKGIVFTVEPTNKAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1007610

Overview

Ecosystem & Geography

Associated Families

Sequences