Scaffold Ga0209596_1007589

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1007589
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7637
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013085	Metagenome	274	Y
F015729	Metagenome / Metatranscriptome	252	Y
F016809	Metagenome / Metatranscriptome	244	Y
F062761	Metagenome	130	Y
F098656	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100758913	F062761	N/A	MGFNHCYLTNVEDLQRYLDNVGLEKFIKTYRSYDALTGPGECFKFLEDKIKEYEMVISNSDIDDILQKGIDNTNESASEQSNYSNK
Ga0209596_10075892	F015729	N/A	MKRPVNFETIDAVDFELLGNSFYTDLDNLQNKKESSWVWVFCNGQALGDYAILFELKWEHDCYSMKKCVLGEGTTGDYIFQDNWISTKWIKTKDTFVEYISRLITSEIKVGKFKN
Ga0209596_10075895	F098656	N/A	MAKKLKEGAQITNEQNSSEVMKARYTHGDEWQSYIADKFEGAGIPPVFYTINDGLSDRIADYQYEGNWIEAKTFINSAEVTKILTLYSTLESMKIRMVVMCEWEPGFKKHAKNVADLRRFGVIVFEGQSECDSFIINESILLNPNKVIKMAEPMLIPFDNLLPHPNNRDLNVKNIPTIKASIINNGFFTQINVVPHQLNDNGEMTYMIFEGHTRYYSLLDLKQKGYVIPPVACINVHWVTSQDIDRLHKMLITTNTTYAGWKLKNFITSHKGNLELLNDIAGVYTYGKMLQAMNQAKKQGWGEANPIYMFCHTDSLAFDDMKKVKDGDYRITESEYDSQIKPILDFMKKLTSDKRKFNGTIMRDIIVDIRIMYNTNPSVKDRFHQFLPWLAMKFIGDYSIDKFPQTKETGQQYWSVIKREYLFMIDNGMIPVQPMVPEKTIMDFA
Ga0209596_10075898	F016809	N/A	MAKSNEEFMKQQLTGSIGGGDEDYLYEEYLLQEKLNEEYWQWKSVQEHSIFPDEVQYDDEYYKSSYLPTPDEELENYKQTKQNGHT
Ga0209596_10075899	F013085	N/A	MDILNEIIEASNHMIDTLQETDFFVETPFIDRIPLKRALQIAMQRKWEQEGDMFLDDSEFLKVCKEVSANGISKTIGDLVDKGALDMSVNEDGEILYSANKNFNLDEL