NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1006746

Scaffold Ga0209596_1006746


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1006746 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8229
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (62.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003803Metagenome467Y
F010832Metagenome / Metatranscriptome298Y
F017612Metagenome239N
F029676Metagenome187Y
F041003Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100674611F010832AGGAGMKDIKDVVAWLEEELAHFEMAVEQCNYVSKADEIRYRMAQELLAWTLGSTFDARYSVSRVPCDVEQDTKAFGSRS
Ga0209596_100674613F041003GGAGGMKEWTPPTDYLDPPKPPRHYKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGIEGLTLAKVKI
Ga0209596_10067465F003803AGGGGGMKKDKTLLRFRIYDGDREYTDYAIIDNKKLLTLNYKEIISVFFCDDKVDDEQFLSDGRAVRIESEIPITDIEVEKLEKLGIAFLLEFKLMEVA
Ga0209596_10067468F029676AGGAGGMSHKNRMFYNYMTTLDAWDEYLGLLKDDDTFAEQWKDTQDDFEEWCEINDVVLVDTRDKVNQLEEAQLQ
Ga0209596_10067469F017612AGGAGGMSIPDTDMHIGDLYEDTLMKYASGQLTKNGLIMSPEEALEHFKQLAIEEGFAVSTIENSAEELLYDLEDVEAEKYKQYLEEKE
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