Scaffold Ga0209596_1006410

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1006410
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8515
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F042214	Metagenome / Metatranscriptome	158	Y
F066743	Metagenome / Metatranscriptome	126	Y
F095381	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100641016	F095381	N/A	MTTTIQLVINGNQVEGQIDQIAQILGMVSNTMAQPVSSIIKEELLPFNQFAIQELTPHLGQELSEKVIAKLEKCADSNYPDFRHFVGMYRTVAGNIEKRQLLKTLSAIYRFKFGRYMNAESVKCALKSEIKYATICPHCGSVASAFVQRLVKEGLWK
Ga0209596_10064102	F066743	GGAGG	MTETQEQLIRSIEQLLENLMTIDEDLAYQYECELYYDCNDDEEPVPIVENFTPELLVELEKDVYDNEV
Ga0209596_100641020	F042214	N/A	METFLTPDEILQLVNTGMVELTEDLILRMVPKVSESYENSDWYNDPNCTMSRHHY
Ga0209596_10064106	F004314	N/A	MYDDYEFDYTANDYGQDLGDYAQDLDEEYVRDGQDYETLAYRHYA