Scaffold Ga0209596_1005861

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1005861
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8995
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004431	Metagenome / Metatranscriptome	438	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F017133	Metagenome / Metatranscriptome	242	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10058611	F000311	GAG	VYFELTAPDRLSFEMAYWDAQMIGLDPHALTPLTFNIGTGSIEKVSRIRDKYNLTESYISDYE
Ga0209596_100586118	F007263	AGG	MIKEYLDENEFYFIKDQIKIHCDEQQFIHVCKAHGEQQGCYYCEFDYDKECECEG
Ga0209596_10058612	F003422	GGA	MSVGSCIILFMTNELVSSIYTFVCDPDECDCLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATITPLTQTKEEKMNGMTVENLPLSDSEKYNPDLLVTYKVIRGYSDAEYTTDKVRNIEYELHNGRTNSKIASALQNNINTVKDIITEAYADSDDQETLRAIAEALDIPLTKEVEWSATIEVSGTITIDLLEDTVDVESEIYDNLSVESQNGNIEVGDVEVTNVRENY
Ga0209596_100586121	F001562	GGAG	MKSQFELDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILENCDPIAFAIGLVEHEDYLAEMENE
Ga0209596_100586122	F013527	GGAG	MKTFQFLTYIDVEAENYDEAIDVFQFQLKYGMNKNNVYVADIKDLELSE
Ga0209596_100586124	F017133	AGG	MTSNWTTFATVSDYPKGLMNLCPCGQVVLAPALYHAGQAHWDNPDKCKELWAISQK
Ga0209596_100586125	F000447	AGGAGG	MGYVEIFRLDDEGAGWVDLSEATPDELFNIEIGLLNEGSFE
Ga0209596_100586126	F050376	AGG	MTLEEYKALVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0209596_100586129	F004431	N/A	QTMTITYSLWDGAQLLGVDFTATSADEMNKAVAELQKVSSNVVAHMRKVTQN
Ga0209596_10058615	F005741	AGG	MANRFRVEIYDANKLNDVTIYSDQGVDKEYLTELVFSNMKNFSGKINAYVFDNVKKKKTTAMFIDESVVQKVKAQTSQLTKVGLGL