Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005728 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005728 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9114
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (40.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9114

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (40.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F021107	Metagenome / Metatranscriptome	220	Y
F021297	Metagenome / Metatranscriptome	219	Y
F028807	Metagenome / Metatranscriptome	190	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100572815	F092032	AGCAGG	MSEVNTGTVCLYGIGPGQQANLFVQSYTVASSFNNTGMVVDESGRTVTGRYDDRRSEISIEGVAKATSIPLLGAKLEFTAKTASAYPGGTASVSFAGVITKVDDRGTSKGFVTVSITAESFEEIAY
Ga0209596_10057282	F003583	N/A	MAKAKPQAKQSGSANLLLAVTLLTGFAGVAALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKA
Ga0209596_10057283	F001923	N/A	MSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVVRRVLAAAITAALVGYAIADHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAAKKPNGKSKAPGKAKRKR
Ga0209596_10057286	F021107	N/A	MITLLLIVVAFAGGFIAGIKNAKSAKVEKAVDILKALKGK
Ga0209596_10057287	F028807	N/A	MITYKISMSGAMLADPYALLRAVFPQWNGEPANANSGYVTVTFDTPQTPADLGTLVKVEVIPNP
Ga0209596_10057289	F021297	AGGA	MSCSNTVTISQGNTFACTFDWTPGASGPANLLGTTLSSDFEDRSGKIYALTVTTANDGLSFTVEYVGSTSAWEVGLGRWDIKFIFPGDTISRTEIFRVNVIDSVTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005728

Overview

Ecosystem & Geography

Associated Families

Sequences