Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005604 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005604 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9227
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (29.17%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9227

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (29.17%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F028807	Metagenome / Metatranscriptome	190	Y
F074555	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100560413	F000957	N/A	MSNFQHLEGMRNLLLEIYEVNERIMTGDIVSPKAAIASTNVKKILTHYHEALHEDGAVKVSLQAYIAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209596_100560414	F005588	N/A	MITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDLQRRTIAKQAADIKLLQARVRDQDDAIIKGTAINPDAYPHE
Ga0209596_100560415	F003714	N/A	MPNAKHPYIETVTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSSRA
Ga0209596_100560422	F028807	N/A	MITYKISMTGAMLADPYALLRAVFPQWNGEPANANSGYVTVTFDTPQTPVDLGPLVKVEVIPTP
Ga0209596_10056045	F002038	GGA	MSSPTPAGIERIARTVSGQYALLLLLDGYPYVEMTARKHADYLSDLGMWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR
Ga0209596_10056047	F074555	N/A	MSQPDPFAFFNDAIKAAHAQNELLAANARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005604

Overview

Ecosystem & Geography

Associated Families

Sequences