Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005450 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005450 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9388
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9388

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F072296	Metagenome	121	N
F085612	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100545012	F072296	AGGAG	MAMQRPQRSALPKFQRVAGGGEKQDYEITHLCGHTGIIQVFAGSNPDNSRWVQAQRDRDCRDCYTAKMVESDQASVDAGKRVALDGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEYEAAIQDVRAGFSDLMMGCEFSDEDYDHSGYAKWWIDTRKDPLEAGIIARLLPDRDILGAGVFTRLSEDGWSPADDATLLPVEVEPEPVQRTATPLPGTAPEPFNPHARGKGRLPVKVVAGPAAGQWQREVEAMDLDDSPF
Ga0209596_10054502	F063654	AGGGGG	MEARTAKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTVNERERSVTHLGLITWNQEDRERRNDAGGQIVRLIECDGTYTIRIVGPTTVRDWSAAKLSKARAHNGEWRDVWTGAAADVHLMEAVARLRALRDAMQEDADAYRRGL
Ga0209596_10054504	F085612	AGGAGG	MSVTDPEYDGEIVTLGIRIFEGVADDLPRWQPWIAGETAHCVASLYRDGANHVRRTSVTRGSTRGVWEIILRDGRYAVVPWGGGRDAEVDLGTDRAVALAHLKERLAALTVGEPRGQMELGL
Ga0209596_10054508	F048283	GAG	MRLTGSLSAFLRKQVETTGPVTVWWSGGKAAPDETTKGEQVEIEVTYTPALIGVGPEVGDDVNASCDAFEVQVHHWLTASYPDADITVTRDSGHLADLSVVTHGFVDRRGVLTTRQAVWSDVWDMIGPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTILVDDASGDSVIECDEDEARAVMRSGFGAMA
Ga0209596_10054509	F063657	N/A	MNGDLMNDVVTEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLVARLGWDFLIDGNENGVPRDTDEALERVQVRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005450

Overview

Ecosystem & Geography

Associated Families

Sequences