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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1005347 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9513 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (52.63%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000722 | Metagenome / Metatranscriptome | 922 | Y |
| F007579 | Metagenome | 348 | Y |
| F008130 | Metagenome | 338 | N |
| F021105 | Metagenome | 220 | Y |
| F068840 | Metagenome | 124 | N |
| F095478 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100534712 | F007579 | GAGG | MSTPTTAEINTQIGNATRELAPGTTWKYNEPGDGYYCLEWMDDPKLQPTEAATMAKATELAANAVG |
| Ga0209596_100534717 | F068840 | GAG | MQLRLKATFTDGTVNEVVTNLSTVVAWERKYKRKASEMASGIGVEDLAYLCYEATRASGTTVPGSLDQFIATLLSIDVLETQDPKVDPAQ |
| Ga0209596_100534719 | F095478 | N/A | ASPRLGTVGDTYEPADGINIEALIEGGFIKSTSKSTKSDKPIKDTNEE |
| Ga0209596_10053472 | F021105 | N/A | MRNPNDEYDRLHDHMTAIARERDHAVRQIDALTKQLEELKDALVLAHEALRREMP |
| Ga0209596_10053476 | F000722 | N/A | MAYGWLVGMGAAQPMTDTPHPETGISQETRESMYPDNYSDKMGKAFMHVVDEILKPVRPVDRLDDHSILLDELVLMYDAHMTIGGQQNRFNASVIRAAINVIKAL |
| Ga0209596_10053478 | F008130 | AGGGGG | MADAKTYVYEVYTTRLDTEQMVLIQIFRDPDNGQVLHAQLAFKNAIGDSWGTPYQLEKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |