Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1004944 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1004944 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9997
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9997

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012113	Metagenome / Metatranscriptome	283	Y
F019290	Metagenome	230	Y
F029043	Metagenome	189	Y
F049401	Metagenome	146	N
F086801	Metagenome	110	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100494414	F012113	N/A	MQQILSFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLIKIVSLLSKLSRK
Ga0209596_100494415	F049401	N/A	MLIWIIGGGIVLSSCASTNYTYTAPSPADIPELIMEWDRLERTIGLVKPEFREQYAKALKALSNAIAEEERWRSRAENK
Ga0209596_100494417	F086801	N/A	MTSVKLVASNEFTEKHAYHLSQIQLATIEAIETKYRAGQAEHGASGPLWAMPTISVTENSIAESVDQISYLMTLRGQIKIIYELARLGMEDSDLCATTARDSCKK
Ga0209596_10049442	F029043	AGG	MSKDEQAIKALQYLLDEGFVSLGYIDGQPSVFLTTSLADAQKAILGLARDSADWWK
Ga0209596_10049444	F006138	GAGG	MAAATIGTTGLVFGLTAETIGLVQSFSETRNIEKNEVRNQQGEITAVGFYNPTTAYSLSVAITGNNALTVGGSFAALANATTVGTCRIDSLTLNKSNSAFVMLDISATGYPNVS
Ga0209596_10049445	F019290	N/A	MEGTTYWGTTNLKVAACVAAFGATLRQSDPVTNIVKQDGSRQVTFWFNAGSGNIEAKKQMECKWSEVTADPESPILYVRAALENRETLLGLCKRTEPIQIISKGGQTLLVPVNAKPELKRAILRAM
Ga0209596_10049446	F090073	AGG	MNEILDDELNGSFVKPGRDYKGDAIADYTEGSRLLMIQCKEPQDSSVYFVWAFLYIHILIAKNRREAIKLAWNKDEFRDQLLGWIEDKTEDDRTLATNIVSEMIEEASRAKVSVVSSGNVIPGND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1004944

Overview

Ecosystem & Geography

Associated Families

Sequences