Scaffold Ga0209596_1004693

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004693
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10353
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F041766	Metagenome	159	N
F047052	Metagenome	150	N
F067738	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100469310	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSRKEHADTYKALGRIEQKIDGHVINHEKS
Ga0209596_100469313	F041766	AGGAG	MTEPKVFIYEIGRCNLDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELDFEK
Ga0209596_100469315	F000722	GGA	VTEESYPEIGITEETRQMYPENYSDKYNKVFKEFIDDIVRPNHSARPIDRLDDHEILLDELTIIYDAHMTIGGEQNRFNASVIRAAINVIRSCSK
Ga0209596_100469316	F011919	N/A	MQESKTDSMSDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSVLAALRALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTLAGNMAIVWKAR
Ga0209596_10046932	F013988	AGGAGG	MAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDDEGDLLFDPAVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTSAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMEAGYIDSLTTVPSQDVLLGTQMYGGALYRQRGSVDQFASFQNMGVTPVSGLNGMIRQLLGIDRPQVA
Ga0209596_10046933	F010237	AGG	MAVPNYTDLFNEGFDDLVAKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTSLDIGGSTLPAYELSVTTVVQT
Ga0209596_10046935	F047052	N/A	LARRKETMKIKLTLTREDKKELLITNLFAISEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPPTWREWLKANPDVEIGVEDSTDTNPTDAATGDNSPNL