NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1004628

Scaffold Ga0209596_1004628


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1004628 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10439
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F015702Metagenome252Y
F023588Metagenome209N
F032578Metagenome179N
F035297Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100462812F032578N/AMIDPIEGRAYDLLKEDIQALNHIKTQIQSLDHERRDQYSTLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKQEYTKAGEALGHLNAAQAELFAQICYGITVDQVTIQYIPEQNSFRVQEVRQ
Ga0209596_100462816F035297AGGAGGMEPLTDRNKAGWIIAFTMIGWMFFLLPMTGEEIPEGHPTPISNQAWVTWIIINFVLLICVHLLISKEHRAMKRGIKTMKRVELARQMHPTRRHD
Ga0209596_100462817F015467GGAMRRITATIVTTLTLIIGIGTAHAVQAPKPDHSPSTTRMEVIPKERRTNIVFRHGDISWLPELAAQAGWPQKTWGKLSMIVLRESGACPARRGGDIVNKNCEVIGHDGSNHASDSGLLQINGVNYNPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLYRATGSDWSPWTVPEGGW
Ga0209596_100462819F015702AGGAGMKTIELEYTASKLAELAREVWGDNAVEYLAARLTTVVNDNQLKVLIDSLKQAKQ
Ga0209596_100462821F023588GAGMVLVTWADAHSGVATWTPIDSLDKDEMIVTTCGFLLATCDGGKPDHVTIYQSRTTEDDVDHVLHIPCAMVRQIAICTPETLMK
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