Scaffold Ga0209596_1004532

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004532
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10568
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F006658	Metagenome / Metatranscriptome	367	Y
F036207	Metagenome / Metatranscriptome	170	Y
F104427	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100453215	F104427	GGA	MNNEDLQSFIKAFEDFMEHFESEELYYEGRMVHEKHRSEAQRIQEQEIEALASKYEVTVDYYIAEFM
Ga0209596_100453218	F000744	GGAG	MTEDFVKLNVHEIGILLSSLELLSVSEEKVIAKDYGSAPALYDKLYSIYSKMDTSNTRLIYDFTPSF
Ga0209596_100453223	F006658	GAG	MTFEEMSTGELIDSPKFQEEQSKKNTLLESLNSPEMIKMREDLAQAHQESIDKSVGWYYNLSEEDKYKAVEALCHIICKAEREGTSHRGLQHTLGLYPQAFWIDDLMTVHNALWTEFQDQETKNWKPKENLKNSSLL
Ga0209596_10045327	F036207	N/A	MFNFISGTIFGIIVATIGFNGVATVLNGIMFQIQKQTLELTQPQLPPPTNDQPNQLL