Scaffold Ga0209596_1004464

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004464
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10660
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004306	Metagenome / Metatranscriptome	444	Y
F017485	Metagenome	240	Y
F027416	Metagenome	194	N
F039484	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100446410	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMFCLLYEVKELRELTKGVSNLQTIRK
Ga0209596_100446412	F027416	N/A	MLTIENIQKLKGLKVGANGKVWKILRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGDYHIHSSKSNIKIAVERQDMVDVYNFLRLIKKEIERAVC
Ga0209596_100446416	F039484	GAGG	MILKNPDKLLKQWIPTTDGNLWFVDDVSVTMDSHGTAYIFRCIIELPVMSSPNQQYYHSTRRVHKEVRLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTNNL
Ga0209596_100446426	F004306	N/A	MSLAQRELGNTFRKDNEKQMSMKHIEIVRFDAGKIRIREYINGQQMDSVVTYQPAILKMTGARLLVVNPDNQEEYYDCRYEDCTIKRING