Scaffold Ga0209596_1004305

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004305
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10897
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F028738	Metagenome / Metatranscriptome	190	N
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F053132	Metagenome / Metatranscriptome	141	N
F068577	Metagenome / Metatranscriptome	124	N
F093501	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100430514	F028738	N/A	VTTSTTHGTGQPINVILPDHTIVLMWIVKTEAIRQFSLSDMNHAEVELADFEAVILAKQAKHVPTFAGATFELNGNAYVIDAVSQSAADVIKRQSIHLKKIWVSARSFFPA
Ga0209596_100430519	F093501	N/A	VKTPQTIVLLSGYARSGKDTFAEGMTRYSANVKRIAFADALKDAANDFSIALGLSVNFHDDTVKATNRETLVAMGRFARSIHKDVFVYNLTEAASRERGHVVVTDTRYINEVVVTKQLMNEVRGWRFIHLHIETVGIGPANDEEAASIREMLEGCIPTQTYAFQPNSAAMIRDVGKSVAKHLEL
Ga0209596_100430521	F053132	N/A	VATPTDDELAEMSRCWGVSIDRLRFLATCPHYDSRPHIRVDDYKDPTDRHIAKAIREAIRGSWLTADAAKIAGVTLKTIEAFVCRHGIIWPPGCRRRLEWGRGTTHTHRLNDEHNNLLAKGRLTMAQAAAQGIAEGLTAAETAERFGFSAPGMYNSAVRQGLRFRSHFEKFGRHKGKPPASSV
Ga0209596_100430524	F068577	N/A	MSHRKPDPLLLRVMAAIHKTAEKPAPGFRTIDQWAVIWKCKRGAARVNIIKGMQLGVIEERTYRVTTRRDAKPYPMAHYGEMTRPRKT
Ga0209596_10043054	F001923	N/A	MSPPPPIDNEATQSLVKDGLVASILGGLAMTARLLLSQEPVTPGWVLRRISAAAITAALVGYAITDHIASPGLRMGVVGAAGYAAPEVMDYILKYLKARGEAEVAKVTKKPNDKKKPSKRGK
Ga0209596_10043055	F036603	N/A	MAAVSVAYISDLILSSFANSSTMALLITDAGTKSDDAGLERQLTSATMGLKACRDLGWALAVGCLGVGIAVFLRFRRANAS
Ga0209596_10043058	F042894	N/A	MPDPLSMSPDMLASPAHVIRGLSYQIAYSRDRVLQGDWTEKYARQRIAMCAAVAEENLRESHNCMAVSIYANLTTGCRALFTWTYVDRNGEKDSGSIHPTIDGR