Scaffold Ga0209596_1004054

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004054
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11292
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F010673	Metagenome	300	Y
F058816	Metagenome / Metatranscriptome	134	N
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100405411	F010673	N/A	MNPKLIPILEKLIARDSVLSSFEARRLPLSARAYVRQNYVMDDSFTPDEQDLIEELPPFADDIADSFRAGIGSDDSVYHLFDDGSLWLKTNAYSSVWTDARDFAVEIILPRMTLSRMDAQLLRAIDMDDAVDGVRQDFFTAFAGVLHRSCHIAHCDARSHWDAFTRQLGDGQREIIEFGGTETGESEGQSFAESFTINA
Ga0209596_100405414	F086618	N/A	MIISRGAKLLTSNKTHMASIQRIATAVDNLLNGNLTHARKSARGLTYSDIFDWLTGPVGWTEKRSRACADYLIGRIDYRTYCNADR
Ga0209596_100405419	F000922	AGG	MKGKAWEKAKALYLAGKSWKAISSETGIVQSTLQSKASRDDWTKFRKGMRDTISSNEIQSLESLSALVRSKLAADAASTLERIDSYELDGIKDESTREQILGSVAKRSALVFGWSEAGESTSVSINLLGSMPDRFAEVVVTNPV
Ga0209596_10040542	F003748	N/A	MFQVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRYINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAEVDADDLDPKPF
Ga0209596_100405421	F058816	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEK
Ga0209596_10040546	F001964	GGAG	MSRNLFGKPLYKVQISGAIGWSDLKERVVKFETVEFASRKDAERAARELNPGEYTQGRIRVVPVELSEDYDIYPTAERSKP
Ga0209596_10040547	F002227	N/A	MKLTIQSRDNAQTIVDLFNAILTGEEAENGAKALSIYDEDKHICSLVAKDGTQILELIIEREEGDRLCPGTPDTETL