Scaffold Ga0209596_1003980

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003980
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11395
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005503	Metagenome / Metatranscriptome	398	Y
F007466	Metagenome	350	Y
F007799	Metagenome	344	N
F013887	Metagenome / Metatranscriptome	267	Y
F028163	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100398011	F013887	AGG	MSYLAKAIKKVKPTAEFSFTENDYSTIKWDILEGDAPTQAEIDAAIEQVKADEIASEAKAKADKETAQAKLAALGLTADDLKALGL
Ga0209596_100398015	F005503	N/A	MSLCIWEHSTRLPREQKMTSGEIGLFLFMCLACILWSIVSYTMGYKEGHKEGYQRGRAVGRHASSQAVTK
Ga0209596_100398016	F007799	AGGCGG	VSFLENYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDQEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGADKRPTVQNMQQVERIDPKIVQDSAVAYDYWSTKHGDVPSFKTREEAEEAGIPTLGIAMETIKENLGGVQVAAAPMCSHGHMIWREGTSAKTNKGWGGYMCSEKAKAKQCAPAWYMLGSDGQWRPQV
Ga0209596_100398017	F028163	GGAGG	MSRVTEMIDVDTMIGRTLIDGKIVAEFKCERCDHCERIEILDRAGYLRAVGGEPVLWFCSKCRK
Ga0209596_10039809	F007466	AGG	MTQWAPVWRVKIDGTDITDSVLANLSITSGRTNIYAQAQAGYCSVTLIIFGQAALPYEINDAISIEVQDTAAAYVPIFGGSVVDIAVSVSQVGSSAYTQEVTITALGALARLQKALTNGVLTQDFDGNQIATILSAVLFNQWQQVPAALQWSTYDPTVTWANAENNGYGEIDTPGNYELAQRASNRTVVYDLVSALATSGLGYLYEDASGLISYGDSTHRTTYLATYGYTDLTANQALGRGITIKTRAGDVRNDITIKYGTLSANEVSDTDATSIATYGDLAQIITTTIKHAADATSQAAFYLALRANPQPIFDSITYALTNPELDNADRDALINVFMGQPIALNDLPSNMSAGVFQGFVEGWTFRASYNQLDVTLLMSPLAYSLQAMTWSDVPIVETWASVSPVLDWANATIVS