Scaffold Ga0209596_1003926

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003926
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11489
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025459	Metagenome	201	N
F034928	Metagenome / Metatranscriptome	173	Y
F041023	Metagenome	160	N
F048162	Metagenome / Metatranscriptome	148	N
F080052	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100392614	F041023	GGAG	MTAEEQHDAECEFTRNLLCGMVQQAVEDLRSEKVFMSKQLNEHQERDRDSALHFIRSKAFQGICDVLALPADKIKTKALKYEHRD
Ga0209596_100392615	F080052	N/A	MEPINFLILFAVCITSAFAGGYILGNMKAHSETEKSRRWWMNRQIRRERGE
Ga0209596_100392619	F025459	AGGAGG	MKMTLEFDETERYEHEVACKGLDILILLDDIDQELRSALKHESGEFANLDADTMEAVRAWIWKERSDRNIPELT
Ga0209596_100392620	F048162	N/A	LKKKRQPTVESERTEALAEAKRLLSEHYDCGLAIVSWEQAGETMHGEFVFGNKYAVEGLAGDSFSILFPDAEEEEEDEEA
Ga0209596_10039268	F034928	N/A	MKVSQEWRGYPLRCWPNHQDDCERWDYEILINGTWLEVVTQATRWIEEEADETLERHLRKKQ