Scaffold Ga0209596_1003817

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003817
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11688
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016784	Metagenome / Metatranscriptome	244	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F033321	Metagenome	177	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10038171	F033321	N/A	RRMSRELEVLREEYWRVRANPIFDNPADYCILLDLIIDRIEVLEGAEE
Ga0209596_100381710	F093528	AGG	MSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPDKSVSDVVKEIQEEAGE
Ga0209596_100381712	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDVYSEGQGENE
Ga0209596_100381714	F095162	GGAG	MESEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLNGTTIAPRIVARAKARGITFTETSTNQGNNGGEA
Ga0209596_100381719	F003784	GAG	MDYSGTDFAAYGLSSPEPRQVQRDTGSKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHKQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE
Ga0209596_100381721	F009331	AGAAG	MCENCLKGGEENGLAHYKRSAHWHDKCDDKGCVCQHKTGPGYVKRDGTKVPLMQLQSP
Ga0209596_100381724	F020684	AGGAG	MVLSNYALTIEEEAVCVEVGYQRQKPYFADPMKNVNYSEGDLWEMWQHVVCAGSELAFARMVGKYDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSSRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKRDEWRYNDRTWYVPVIYLNPMESLIFNGE
Ga0209596_100381729	F016784	AGGA	MDLNTFDYVEPEFKNVIATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGALRV
Ga0209596_100381731	F001094	AGGAG	MNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKAVEFGRKAK
Ga0209596_10038175	F007691	AGGCGG	METINELINEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYSGEGEGE
Ga0209596_10038178	F005558	GGAGG	MNQESMSWSEIAQLTHATQVENFDWCWCEDNEGNENPYSDCPKEEK