NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003400

Scaffold Ga0209596_1003400


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003400 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12532
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F044325Metagenome154Y
F062749Metagenome130Y
F082106Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100340021F044325N/AMKQLIQRLLFGYRSNPAAYTPKGGAKLTYKGHNAEAIHSALVLMQYNIRNAKD
Ga0209596_100340022F062749N/AMKTKLSLFMWAVASMFMSFWAVSFAMSGVYYDNSELLTFSISFCASLVSAVCGAGFMQQWMKK
Ga0209596_100340023F041191GGAMRLLWNPTKLTCEFIVPDIEKSDGVQKVIGFSRGWHHWNSIRLGIRKENDYCVLYFYAYIRGERTIQRIGRYAIGELVNCELNWGHYIECKANDGYAFRIAPKCSFPIGYQLYSYAEKDGVEGVQVDIEIEIINLKVS
Ga0209596_10034009F082106N/AMKIFSIKEFEQLYHAWKRTKMQPRFHDILNVERFNLTKKKVVKKRKTELTTNHLDLPVNNVIQHKETKDAFNTNKFTDLIIAYLKSVHNCNSARRISSEGRYRKGIGYISGLNKGMEDIQCILKGKLFAIEVKSPSDRIGEAQLKRKAAVESDGGHYIIATSFEQVQMELLSMLK

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