Scaffold Ga0209596_1003382

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003382
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12574
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.22%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F007690	Metagenome	346	Y
F010683	Metagenome	300	Y
F017129	Metagenome / Metatranscriptome	242	Y
F018001	Metagenome	237	Y
F018718	Metagenome / Metatranscriptome	233	Y
F019478	Metagenome	229	Y
F021979	Metagenome	216	Y
F023789	Metagenome / Metatranscriptome	208	Y
F029999	Metagenome / Metatranscriptome	186	Y
F039484	Metagenome	163	N
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100338214	F023789	N/A	MDTTNTHRLTPVERIELQSKIQRLQWLLKECIGIEEYELCSQIRNIIQTKTAILNENQSTNG
Ga0209596_100338215	F000785	N/A	MRVTNKKGMKFDCTRLMKWAEDKLGKSKCTAIAFTWEPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQTFRWYNHYNVKFGYKNNPYELAARENEKLVKRAYKKQK
Ga0209596_100338219	F018718	N/A	MNIREFYLANYPSDDLGLELNKTPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYEYVYNLWLK
Ga0209596_100338221	F010683	N/A	MNKRVTKKSVKPAKKVASKKATAMNIIKHKRVVLESVGTESLPDMVFVSAAPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209596_100338224	F029999	N/A	MSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLVEANQFLKMFKSESVKINSILREYPVSMGKFPKKFHKEIKSDLQSAGFGTISKYLLK
Ga0209596_100338231	F017129	N/A	MNTTYYNYNDVQAYQALESERAGIELDPSYQQWVKELNVSQSYVSPEGAIKAKYLTDQYSFSTSEPKSSFLNFLKIKGIWS
Ga0209596_100338234	F007690	N/A	MLTIENVDKLVNQGIWDGWEVREILEGTHNNTYIFELARYRAHQGYATEKCIIMLERTGHTLPNKSNLVYFFIYNSQRTDICASADWLADKDNMIAKLEYILVNKENL
Ga0209596_100338235	F018001	N/A	MLTIQNIEYLKGKELNDWKVLDAGEDLRSRMGKNVYLLTFARIDKIGVMQDDRAGVIIDRNINPLLKGYHIKIVYEDWTYEIDTIVWPAENIRNKDVFFGRVLYKINEEYWKRNK
Ga0209596_100338236	F084228	N/A	MLTIENITKLENRKLIGGWVVRDMNCHPTRKKYIFDIHCMSPIGVCMDRCTISLNRIGELQRNMFKPDTTAYFFNYNGERTDVCVTGEWIKNPENFISQLKYIINEYHNKQ
Ga0209596_100338237	F019478	AGG	MVLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDSEVPSRYVWVEVRKDGRMDSDGDWVYSLNYMRCNQHSITAKWF
Ga0209596_10033826	F039484	GGA	MIIQNPDKLLKQWIPTTDGNLWFVDDVSVTMDSHGTAYIFRCIVELPVTISPNQQYYHQSRRVHKEVKLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTDNL
Ga0209596_10033827	F021979	N/A	MLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFQIHKRVGEWTIQGIKHKEFTIQLVRERLVMGGYVMDTGIVKQNFRWRSIHNIEDFRTITGFTMCLDGHIKNVIR