Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1003371 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1003371 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12611
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (85.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12611

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (85.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F037735	Metagenome	167	N
F063702	Metagenome	129	Y
F090083	Metagenome	108	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100337113	F090083	AGCAG	MEGLTTGIEVLGLKEAVKYLAQVEPGFKKAYVANMKMVAQPMTDAMKASYDDSRFPSGTKRKWSPEGRQVFPLTAAAAVKGVSLRVNNKKTGAAFSVMQKNPAASIFDIAGRANANLLATAFSTKFGRSASRVIWPVFETKISDISANVKKVADDVMAEVNKNFKVV
Ga0209596_100337116	F063702	AGCAGG	MKYTIISDKIGVVGEKFVPGEGINIEALLAHGFIVSDEIVNDTTAPKSAKTKALPKKD
Ga0209596_100337117	F037735	GGTGG	MAAPTTEIIYDDTITYEEEGVIYDQGGYTDLFNEALDDLANTLTTITGLRVVYDPNKINPPCVFIDAPSFDAFNYNIVTMTFSIKVITLGAADLNGLRNVLNMSASLLSKNVAVKSGRPGYLPIGGQTFAAYDLSIEMQAQTAG
Ga0209596_10033713	F105190	GGGGG	MKCELCKAELTAFDIRLQDLLQGICLNCGKAGDWLHMTPEESRRCAELHAWANMTTDQQAAYDRNRGN
Ga0209596_10033714	F001332	AGGA	MTTHDMIAAIAKAEIAMKSAQWQIERQAEDVAALRKALVELAYVAEENGVYLSNLTKTTQDVIVAIRLGGFK
Ga0209596_10033718	F004955	GGA	MTFNPSKALIALVGLICTTVLIAVGSIDQDQGLPIITMIVGYSVGNGMAALTNKSVEPIIKKKER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1003371

Overview

Ecosystem & Geography

Associated Families

Sequences