Scaffold Ga0209596_1003347

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003347
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12651
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F057983	Metagenome	135	N
F074789	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100334710	F001964	GGAG	MSRNLFGKPLYKVQLSGAIGWSDMKEKVVSYQTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERIQS
Ga0209596_100334711	F002227	AGCAG	MKLTIQSKQNAQTIVDLFNAILTGEEAESGATPLSIYDENKHICSLVAKDGTQILELIIEREEGDRLCPGTPDTETL
Ga0209596_100334714	F010673	N/A	MNPKLIPILERILSRDTVLSPFHADRLPQSALAYIRQNYRMDSFLSDEEQDLIEMLAPFADHIADSFREDESSDASKYYLFQDGSLWLKTNAYSSIWTDARDFAVEVILPQMRLSRMDADLLRAIEMDDAVESVRQDFFTAFARIVSHELEIQWSEARERWYNYCQSAGESDRLELGGYRQGEAEAREYLEWIKTIA
Ga0209596_100334716	F074789	N/A	MSPEPIISEFRALESKHLVRLRAEPETESYFSVFGEPDSAQERQQMIDTIENLGCWCVISEFYADGAWHHSDSVGFCTGYENPLKPEENFYVVDLMRAAIDSLNRPEPV
Ga0209596_100334722	F000922	N/A	MTAKEWERAKALYVSGRGWKAIGEQLKLNVDTLKSKASREGVTKLRKETEAIISSEISVRTEKSLEALSALVRGKLAEDASSTLERVNGYCLDGIKDEATREQIIGSVAKRSALVFGWSEAGEASNVSITLLGSMPDRFAEVVVTNPV
Ga0209596_100334724	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPAGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFITYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGTGEGAQLLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSSSGTKGTVFSVNSSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209596_10033474	F003748	N/A	MFTVNRRDAGGSYINAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKRTLRIKNMREVPIAEVDGDELDPKPF
Ga0209596_10033478	F057983	N/A	METNQQFVTAEKFDKLAKFLEKISKRLNEIEASNKKIMEQLESGGDSDDSAWEGFGPKPEKTPINPNAEQYTLELHHGPYTIYRHDGESDKEWQRRKDHLMDQRITFLNGSGQNGTPEQVAYLQRIEERLGRKVFQYPLATT