Scaffold Ga0209596_1003316

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003316
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12703
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y
F072296	Metagenome	121	N
F078664	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100331613	F063654	GGAG	MMEARTTKVRATLAPRMDATRYTHSYVVNAVPQYRPFTTVKGDHSVQHWGLISWDQQDRERRNEAGGQIAYLTERDGVYTISVVGPLTVRDWSAGKLSKARAHNGEWRDVWTGAAADGVTLMEAVARLRALRDALQEDADAYRRCL
Ga0209596_100331615	F066734	AGGAG	MRTRDLVQDAIWIAFSASLAWARSAGRHWRRIVAVTTMGIAIARAVIWIAKAVASAGTVDAFLNLIGLGEYVAPFEQAVDSVIGTVVAIILTVTPTG
Ga0209596_100331618	F078664	GAGG	MATIASLWAKAGGSQSGLHELAAIARKHCPNGRAFATSTMAMQSCGCPVHAYVRSEPGLYRLAHVERNRDAYVSNEWDLWSKEDDEHVSSD
Ga0209596_10033164	F072296	AGG	MMALQRPQRTSLPAFQRVAGGGEKIDYEITHLCGHSGIIQVFAGSNPDNSRWVQAQKDRDCRDCYTAKMVESDQASIDAGKRVALDGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEFEVAIQDVRSAFSDLMMGCEFSDEDYDHSGYAKWWIDTRKEPLEAGIIARLLPDRDILGTGVFTRLSDDGWTPAVDDATLLPVEVEPEPVQRTATPLPGTAPEPFNPHARGKGRLPVKVVAGPAAGQWQREVEAMDLDDSPF
Ga0209596_10033167	F063657	N/A	MNGDLMDDVVTEVSVTGAVTMDGRLRFRSPLDVEAWAHDHLLARLAWEYLIDGDDNGVPRDTDSALERVRTRLIPEAVRRTMLGRIADGYYLTWAVYGLDDKRQVEFLDRAWHEFLALIARGDG
Ga0209596_10033168	F048283	AGG	VEIEVTYTPTLIGVGPEVGDDVNASCDAFEVQVHMELSARYPDADITVTRDHGHLADLSVVTHGFVDQRGVLTTRQAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTILVDDASGDSVIECDEDEARAVMRSGFGAIA