Scaffold Ga0209596_1003279

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1003279
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12821
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F086833	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100327926	F054683	N/A	MNKTESRKALNKLVFEMVTGLGYEVVDDGEGGRVTFIRPGNENLYDSIDYHKSRFDICILNFDVSDKTKEDSKTIEWFINTQRKALDI
Ga0209596_100327927	F085381	N/A	MKTVLEQLMELKDKISAIEIAVCGETICGDGACGCGCDEPPVEVEDEGPEFDSAGFSEADRAVDSQYVVTQDDKYAGHVHLTRVELIDFATRLTERVLDSVKKAVTEVELNVDDLVTLELNSWTNNTIEMELDKDTLTNNINSEIEDTINLDPDSISDEIDDIFGDMYLERIS
Ga0209596_100327930	F078411	N/A	MDYNKHTDEVLERLQAHQILEILATANKSIDQALKQIQELEHNSMMYLDLRPTQQIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN
Ga0209596_100327938	F086833	N/A	MNKLAELLGLRAQIAELENEINNESITFTKEELIEFTKTISNAVANGVKFELSKKDNFDFGSALYTKRNSDLMGGLEVKVSRGRVLSEVVDSIDWVLDDENVESVVETVLEGLGK