NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1002954

Scaffold Ga0209596_1002954


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1002954 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13660
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030426Metagenome / Metatranscriptome185N
F045742Metagenome / Metatranscriptome152N
F057367Metagenome136N
F063694Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100295410F063694N/AMITEMQKQLNTITVGSILAADQLRELHSAVKVAQARLRELLQLIELSCIEHIETTGHDIELVDGRRWYVGTEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCSSPWKNGAVKQLIGQAKFDELFLTTTVQSLETGKAAKVLKVADPAFLKGGTQ
Ga0209596_100295414F057367GAGMQEDRTTSSGIDLMTWLNFEAAITRNPRVAQSLRDSAAEIGHLRTQLKAAGVHNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMAESVRYCKKLMQS
Ga0209596_10029543F030426GGAGGMRPAITTTPQAAVNEILGSIAWRHLAIADIENLDEDPVDQYNRIKIREALAEAFLAGVAWGIDNKKGNK
Ga0209596_10029547F045742AGGAGGMRSRSEPKRKPKKKYAGRLARKHTGSGWCDIETNFPPSIVLAACDKLERESFGEGSEGVRAETRRNARTLAALLEFTDMRVVDVGKLLHINRDKAWNLRRKWIDLEESQRQRWLKVVFARLK
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