Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1002875 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13963 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (69.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F048283 | Metagenome / Metatranscriptome | 148 | N |
F063654 | Metagenome / Metatranscriptome | 129 | N |
F063657 | Metagenome / Metatranscriptome | 129 | N |
F066734 | Metagenome | 126 | Y |
F072296 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100287513 | F066734 | GGAG | MRTRDLVQDAIWIAFSASLAWARSAGRHWRRVVAVTTMGIAIARAVIWVAKAVASAGTVDAFLNLIGLGEYVAPFEQGVDNVIATVVAIILTVTPNG |
Ga0209596_100287515 | F063654 | GGAG | MEARTIKARATLAPRMDPTRYTHSYVVNAVPQYRPFTTVKGDHSVQHWGLISWDQQDRERRNEAGGQIAYLTERDGVYTISVVGPLTVRDWSAGKLSKARAHNGEWRDVWTGAAADGVTLMEAVTRLRALRDAMQEDADAYRRGL |
Ga0209596_100287519 | F048283 | N/A | MWHHVGQTTKGEQVEIEITYTPALIGVGPEVGDDVNASCDAFEVQVHMELSTRYPDADITVTRHHGHLADLSVVTHGFVDQRGVLTVRQAVWSDVWDLIGPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTIVVDDASGDSVIECDEDEARAVMRSGFGAMA |
Ga0209596_100287520 | F063657 | N/A | MNGDLMDDVVTEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLVARLGWEFLIDANENGVPRDTDEALERVQVRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDG |
Ga0209596_100287523 | F072296 | AGGAG | MAMQRPQRTSLPAFQRVAGGGEKIDYPITHLCGHTGIIQVFAGSNPDNSRWVQAQKDRDCRDCYTAKMVESDQASVDAGKRVALDGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEFTAGIQDVRSAFSDLMMGCEFSDEDYDHSGYAKWWIDSRKDPLDGIIARLLPDRDILGTGVFTRLSEDGWTPAVDDATLLPVEVEEEPVQRTATPLPGTAPEPFNPHARGKGRLPVKVVAGPAAGQ |
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