Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1002791 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1002791 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14254
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (25.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14254

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (25.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001298	Metagenome / Metatranscriptome	727	Y
F005588	Metagenome / Metatranscriptome	395	Y
F014261	Metagenome	264	Y
F021107	Metagenome / Metatranscriptome	220	Y
F053888	Metagenome	140	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100279113	F021107	N/A	MITFLIGLLIGFIGGFIGGIKNAKSAKVEKAVDILKALKGK
Ga0209596_100279123	F092032	AGG	MSAVNTGLVCLYGIGAGQQASLYVQSYSVSSGFNNTGMVVDETGRTITGRYDDRRSEISVEGVAHASSIPALGSTLSFTAKTTSAYPGGAASVSFSGVITKVDDRGSSKGFVTVSLTAESFEEITY
Ga0209596_100279126	F001298	AGG	MSLFAEFLPDAKEMVADFPVAGSANSGAITFACLISDPAMQTVLESGGYMERTQYSVRLPAATASWTLPDGSTGASTAIISGGLPIASLGQGKKIVVGGKTVRITTQTYKPASAWLTLIVIDDNQ
Ga0209596_10027913	F000957	N/A	MSNFQHLEGMRNLLTEIYEVNERIMTGDIISAKAAIASTNVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209596_10027914	F005588	N/A	MPNPLAHSPDMITTIRPNKMPAFWWVCPWAYARTLHMSANAVKAYADQADRTLEMYVRIVEEKNAEIRTLKERIADQNDAIIRGTAINPDAHPHE
Ga0209596_10027916	F053888	N/A	MNQSSVSFIKGLDGRVLTLARPVLPHAARRLVSVIPQLTALNTAGKSQADAAEAMGVSVGCIRNWITLAGIPWSNLNKRGPYKRIK
Ga0209596_10027917	F014261	N/A	MKTLIALIIFGWLAVVTFCGPELARAINGPEPVKAKTHRIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1002791

Overview

Ecosystem & Geography

Associated Families

Sequences