Scaffold Ga0209596_1002751

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002751
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14348
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019997	Metagenome / Metatranscriptome	226	Y
F030064	Metagenome	186	Y
F089937	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100275111	F012098	AGAAG	MPKVHTLGPLFVQVTRFPYDWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGRWGAMKEEEEALSGALARREVTYEDFTEEAGWTPATESNRETSIDGLYSRFDFMDGAVNVYDRQTHFDMAEAPERG
Ga0209596_100275119	F089937	GGAGG	VATAATMANRLRYELGDIGRSFVYQFVADGTTNRFLVPYSPLDGAYLAINVDGVDVSADVEVEEATGHIVFDTTPAAGDVVIVAGNYFKYFTETEITQYICDAFAQHVTFHTDSYGRTITMATLPAVEEYPVIINASTLALYTLATDASFDIDIQAPDGVMIPRSERYRQLMQMIDVKKNQYKELCSQLGIGLYKIDVFSLRRISKTTNEYVPVYEPQEIDNKSPKTRVRIPIPTYGNVKPTPTTVVQDLNIYEGDAYEFSIRLDFEVNNLTPLAQIRSLPGAAVVVTEFTVTKPNIVEDGDNQRTLVLSLTGAQTRLLPGKSYYDVQLTDADNVTHTYVSGIIFVTKEVSQ
Ga0209596_10027513	F019997	AGGAG	MDINVLKAAGATWLRASAAAVAALYMSGISDPKILANAFIAGLLGPAAKFINPKDPSYGFGKK
Ga0209596_10027514	F030064	N/A	MTIGIVTGALISLGVLLNPLYKRVKHFMQWMERFMRDWEGEEAAPGRDEVPGVMQRLNKLDGELSQNGGKSTKDTVNKLYANQELVMEAFVEMGERLIAIENCLNKSEVNTPNPVN
Ga0209596_10027518	F016389	GGA	MKLIRKFAIQGHYVPSAAHSPRGPFPPEVLAGPKMDQSEYHADSLHVGLDDVRFFKCKDCHTVLETNELEDHDCADFK