Scaffold Ga0209596_1002723

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002723
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14450
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F024977	Metagenome	203	Y
F067726	Metagenome	125	Y
F103251	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100272319	F001332	AGGA	MTDQLAVVSAAIAKADIAMKAAAWQIERLSDDVSMLRKALFELAYVAEEHGIYLSNMTKSTQDAIVAMRLGGFK
Ga0209596_100272322	F024977	N/A	MTEFMQPINPIRIFTGNDEWSFCSPVFAIAISNDHHVEYLTINGGFYRSEQIKFAEMNVNGQWIRLETNHLRTPDPSNI
Ga0209596_10027236	F067726	GGA	MDRYVITSTRVGEIGTAFVASPSDDIAWLLEGGFIQRSDTHPSKGAKLATKPDATENKKD
Ga0209596_10027239	F103251	AGGAG	MTMQVQGLESTLKTLQKIQPEVKKQFFKDAKQIVKPAVDEAKNAYRSDYLSGMTRAWSPGGRPIFPWNLGAAQKGVTVQTSLSKKQDAVLIFAQKDAGASIFDMAGKRTENRLGDALNRFQTPSRVMWRSYEHHAGQIEGEMQKSVDEVMSRISALEKMVIL