Scaffold Ga0209596_1002495

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002495
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15200
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (50.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F002038	Metagenome / Metatranscriptome	600	Y
F005588	Metagenome / Metatranscriptome	395	Y
F010765	Metagenome / Metatranscriptome	299	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y
F029754	Metagenome / Metatranscriptome	187	N
F074555	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10024951	F001298	N/A	GSFFVPPSKAGKVMSLYSEFLADAKEMIADFGVSGSANSGAITFSCLISDPAVMTVLESGGYCERTQYSVRLPAVTASWSLPDGSIGASAALLSGGVPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ
Ga0209596_100249511	F029754	AGTAG	MSCNTVTFKRGTNFGSSTVFAPEAPPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYVGSTADWAIGTARWDIKFTQGTTIFYSDTMRLDIIGQVTV
Ga0209596_100249514	F021107	N/A	MITLLLIVVGFAGGFYAGVKNAKSAKVEKAVDILKALKGK
Ga0209596_100249517	F019449	N/A	MTTETFTTIVVPGIASAAYLSASIACFIAHRPALAVMWLCYSIANVCLLSTVLRK
Ga0209596_100249518	F010765	N/A	MSPLSSPPQPDDMPVALRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTPTKGD
Ga0209596_100249521	F005588	N/A	MPDPLAHSPDMITAIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDLQRRTIAKQAADIKLLQARVRDQDDAIIKGTAITPDATPYRDETIHE
Ga0209596_100249522	F000957	GAG	MSNFQHLEGMRNLLAEIYEVNERIMTGDICSAKSAIASINVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGVQYSYELDGFEVAGSQVPRRV
Ga0209596_100249529	F074555	N/A	MSQPDPFAFFNDAIKAAHTQNELLAANARIKQLEERLEGMREAGDAIWYCVRHAKRVDPAELIEAIEDWQEARNHG
Ga0209596_100249531	F002038	N/A	MTTTPAGIERIARTVQGQYALLLLLDGYPYVEMTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELAFNR
Ga0209596_10024954	F001725	N/A	MASISNGVTCLYGVAGSISNLFVQSYSLSSSFNAEATVVNEDGLTKTHRLDDRKSEITIEGICKTSTMPLLGVALSFTLNAQTAYPAGSASVSFAGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA