Scaffold Ga0209596_1002320

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002320
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15741
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F020166	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100232025	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNSLAVEDRTEEASKAMSSNAGETAVWVIQTFMNKFNKAADELKGE
Ga0209596_100232031	F000671	GAGG	MSEKILCYSCNKTKNKLNAKRSSLLPINLFLCQTCIDEKLEPRWVILIAGRQNGHELVKDFIQKKKYIGAEITASELLI
Ga0209596_100232033	F000473	GGA	MTFINKDKDHFKYGMNMWNGEPAKPVFYNQEMKKKLRELNKPMLLLMDVVRYPDFLALRLYEDNFIQFDGIEKEKVIDYVSKAKKLLESYGVRVELEGRPMA
Ga0209596_10023209	F020166	N/A	MSKEPKIMKMDWRSLGYWPVWKDGKIVWEKDPHDK