Scaffold Ga0209596_1002297

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002297
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15822
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F049495	Metagenome	146	Y
F052465	Metagenome / Metatranscriptome	142	Y
F071151	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10022974	F052465	AGGA	MLNNERNTLKRVSMLERLHQRYNTLRVARERLELLKEAKLP
Ga0209596_10022975	F006696	GAGG	MKFIKFLKDYYRDLTPAEVIQRELAQAHLDRLEAEAACEYAQAVLDMNMTRIERLNTRLGEYK
Ga0209596_10022976	F071151	AGGAG	MNTCCDYGKCTNGPDCPVRQKRLKEINDAYANGYNDAQLSDPIDDLADTFKALLTMMAVVLCGWIAFLLFWGK
Ga0209596_10022979	F049495	GAG	MSDLPNFAAWNHETLAKFALDSYLRMQAQQDAIEQLRGDLKDAMQLVRASTFSVDD