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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1002166 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16296 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (87.10%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005737 | Metagenome | 391 | Y |
| F030055 | Metagenome | 186 | Y |
| F035727 | Metagenome | 171 | Y |
| F062575 | Metagenome | 130 | N |
| F066703 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100216621 | F062575 | GGA | VALYKDAKAAGTDLYKITKEISGFIGQFFDSHEEIKKEVKRQELDPPKTKSMKAQALENVFHQIELERQSVELREFLIYHTDPALGAVWSRFEEEYKKLNEENEKQIELDRQMEIQRKWQRRKRLSNLQDKALIIAAVLTVTIYLHLLLWSIKQMTTGK |
| Ga0209596_10021664 | F035727 | GAG | MNDEHRKIANSILSRLKDGEEFSQSVIRTALIDVGDLAPDRGEGLDQAVQEEDQGGGESRSLSLVATNLIRLSEKAWSESRGRLAETHE |
| Ga0209596_10021665 | F066703 | GGA | MSFAKPESKKDDNFDAVQKLMCSVHGCPNRWSVQMDGEKPKCSKHQWQKTDKKPPVQSWHDVGEQF |
| Ga0209596_10021668 | F030055 | AGGA | MKHIETLPYNDARIMVDTGLDHVVIIHDDLLEELDCYFCPVTGNLWHAYLGQADLYNVLSAAVIDSLEREYKSKWEDDYV |
| Ga0209596_10021669 | F005737 | GGAGG | MFDIEHYKKPRDWAQVALWIVSVAAIVVVLFDLFVWRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |