Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1002136 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1002136 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16417
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16417

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023105	Metagenome / Metatranscriptome	211	Y
F035303	Metagenome	172	N
F039137	Metagenome	164	Y
F045092	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100213615	F039137	AGG	MSDVYELNTSRKYLNNEGKPRAERQFVVVGADTEGDVVALLGGTLPGEYAHYPNDGALPYDMLAFDYSITKEPNAVATWQVTMRYRAEIGANQAFNNPTSTLLEPNEVGYRTARLSMSAEFKDQFRKFNSVKLMQDKASSTYESTDIGGISVDVAGHPLSVLSYKQNISILITDSVLPASQEIAVQIGTRNASLFLNYPAGSVVFAGCNCETIPEVGRNSIEYSFVYDQNSHYIQYPVRNENGVVIYAEAAVGSVAKGSCLTVYNKQPFPYTSNFSNLSQYFSGL
Ga0209596_100213616	F045092	AGGA	MSAEINIQLNLEASSGNFRASFRPNSITPDMGTLISSDISQNIGTAWTLLTVGSSVVAGGYYWFRNLDTSTSATWNPSIKVSIGGTSAAATSTPFLNLRPGEFALGRCVTTTFSAISSTATANLQFGILSL
Ga0209596_10021367	F023105	GGA	MSVDSLIAQFGQSLEIYLRAESVDAGGAYTRVYTASTVFITAYLQPATPSESMVNGAIRASTGLTAYVNAVDGLSLATGQRLVDADSIMYEIQGFRRPDMRSGPDQMAYFILALTTVEGE
Ga0209596_10021369	F035303	AGGCGG	MSQVILTTIYNKLTAVTTAGTVYNLVGGKIYQLEGPQGSVMPMLVYATSNEDTTTFMTSATQSLHTIDCAFTFYFKPDSSVVTAMAAEAALFLLLHKASMSPSDVSYSTIESICTSRGVPTINVDSIVIDTTYRIFATKQS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1002136

Overview

Ecosystem & Geography

Associated Families

Sequences