Scaffold Ga0209596_1002076

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1002076
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16726
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (57.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F021988	Metagenome / Metatranscriptome	216	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10020761	F031497	N/A	AESLVNLMDDHWFNATIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMLHVYSIQGSTSEGLLLANELNECIKAYQENNQLNNLKLPSRSYKVKREEKRIHTFGWTEEEDPFS
Ga0209596_100207616	F006846	N/A	MLYELVERYLMRPKRLREAIQAVVRENDEILKAITRYENQEPTNLTWSEGNTWYGWTLNPVKNRYYFDDIGNESLMGLWEDQWLREADEYGTV
Ga0209596_100207625	F021988	N/A	MSNGFKKEDGTGTTPATNAGVAAGAITSRETPKRYPRQGVKIDTNKHGIRRETSLIPKPPKKSGRKKV
Ga0209596_100207626	F001280	GAG	MCMDCGCGINAVGMGLGMTPVTIEDVSRDGESGLTLGMVSTPEQTRQFINE