NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1002057

Scaffold Ga0209596_1002057


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1002057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16784
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014968Metagenome258Y
F016389Metagenome / Metatranscriptome247Y
F030064Metagenome186Y
F091303Metagenome / Metatranscriptome107N
F093195Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100205710F091303GGAMEKVPQLNRKLLSINPNRQTRKSEFSFNNNLGYKSKAEPSVVSWGNRGKGVQGESVNSQNVASKFVIRKAGKAL
Ga0209596_100205719F014968N/AMIVTLSKEEVRACADIALNRWMIKFGSVDRPNYAGENKKYLEPEIAANVRTIVAEYAVAKLYKQPLTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPVEECTKDEYHYPPENSWRIPLNKFNDTIPE
Ga0209596_10020572F016389N/AMKVIRKFAVQGHYVPTSSHAPRGPFPPEVLAGPQMDQSEYHADSLHVALDEVRFFKCRDCDEVLETTELEGHNCEDFK
Ga0209596_10020574F093195AGAAGMAGAIDKGHDSYNHFNDGLQTRVNPLSSIDKKILNFAAKVSANPSIKTHGQILRNFGMYPPEFWTRAQNLSEHPDVDPQHKESLASMFSAPSRTGPMGGGAPVDTESKKFSHGVEW
Ga0209596_10020576F030064AGGAGVTTFFTTIGIVAGALISIGVLLSPFYKKIKYFMQWMERFMRDWEGEEASPGRDAVPGVMQRLNNMDGELSQNGGYTTVKDRVNRLYENQTRVMDNQDTMLEAFVEMGERLISIEKCLSNQGTISATE
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