Scaffold Ga0209596_1001988

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001988
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17080
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F014840	Metagenome	259	Y
F048799	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100198811	F010016	AGGA	MKKTAQNDVTGDWLQSKPNNEMFEKNFDTIFRKKKETLPEYELNKSTGEVQKVCECGVKGCE
Ga0209596_100198814	F048799	GAGG	MTDVGVPSSAVMNLKNMQNKRRKIVQNAKLNNFSPSARQAIREFEDWQMRVFKKNAKKGWRFFQPDTFDKPTPRSAREAWGAPYKPDTFEKNENKNEKIMIAVVVIVLLLLSTL
Ga0209596_100198817	F014840	N/A	MKKIGIEDMAMIPFSYAILDDEGEVIRKHRWSVKEAKWFTENNPSVKVVKLDKPIVVKEDLFKLVGECLF
Ga0209596_100198818	F006587	GGAGG	MDNKYEGTGYTIVGLIVGCCITWGIMEYNQTQTKYKMNLKCIQGELYEEVRTNMFVKSHLECFEQKTLVP