Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1001762 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1001762 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18291
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (65.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18291

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (65.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F007467	Metagenome / Metatranscriptome	350	Y
F008071	Metagenome	339	Y
F082338	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10017621	F082338	N/A	CNALIVYNTILQSFEGTWSYGAIQLTQTNFSALGRRLAAKSSNGLITNYNGYKTLDSTLEGDYKDAGSYYESYVSTRAFIFGDPFADKHGSHFEISFDKTFSEDVDVFIQRDTDSSFVSVLANIDASSTELTLPFVLPAVLTASSRNRVANDLRTYEKWRNLAIKVASATGQFSVRQIIAAANPDTIQIQKTI
Ga0209596_100176210	F007467	N/A	LSLDRTELAGIFKPVTDKEAWAKFEDGLKDVTSMEEALAWVKKNQPIVEKLTIRSMIRNFNDDISRANKSWRN
Ga0209596_100176217	F003304	GGA	MRKALVTQAFGDEWKKILELTQPRMEAYCKRHQIDFIALEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYFDAMCIHYAGQSADLAKLAELIKADEAELVAVGR
Ga0209596_10017622	F008071	AGAAG	MTAMEYIELSGVPESRWPIFREWFSWYAERGMVGVAKDGEEIVGVAVARVINESEEPIHYLHRPDGDTAFVDLTVTSTDGTSTPRSRRAMQCLLTILWDRFGPRRSLIFKRNGVQKKYDYMKFMQKALA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1001762

Overview

Ecosystem & Geography

Associated Families

Sequences