Scaffold Ga0209596_1001759

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001759
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18295
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F057197	Metagenome / Metatranscriptome	136	Y
F073241	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100175918	F073241	AGGA	MNLIHIMKDDNGDFEPLDLTPVFYKGNIMCVPHWRIKNTWVFPGGKTYTTAELLALGAKVSVSLLWPRGWVTKMLGRHNPAMLSQESLTNLIKGKANAL
Ga0209596_100175922	F019099	GAGG	LIINGKFIKDWDKSQISTAYQRPPQFQIITWDMGRVQSWLLGKQPLARTLLEKVIR
Ga0209596_100175924	F057197	GAGG	MTDFAAWRYENLVQFAKEATERMTLLNAEVDALNADLKAAINAYRDLLRRDASVLLEATHSAEAQKTGE