Scaffold Ga0209596_1001596

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001596
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19399
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (47.06%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F012434	Metagenome	280	Y
F014606	Metagenome	261	Y
F016936	Metagenome / Metatranscriptome	243	Y
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y
F034845	Metagenome	173	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100159614	F012434	N/A	MSPTTALTRALVLALTAPDQARADRAIALAESIGAGCTAKQVAQAKRNASKIARA
Ga0209596_100159618	F029363	N/A	MNQDNYDTENEMLWAAQDLRTMTSCKAEIAISRRVTIKTGAIKEGWDYQITFGDILNRGAWRWECAQSDTLEGAMDITRAQITAQGDEKARELLQLRDAAAKLGLKLVEVTA
Ga0209596_100159619	F016936	GGAGG	MNLELIHAELVRIREALEARPYAAGAPAAKPAPTSTKTDEVPLPTEVIANAGEVQVHFGKNKGVALSSLGERSVGWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTIIHQKRGTLPSAAVPTAPAATSVNEEHVPF
Ga0209596_100159621	F024061	AGGGGG	MNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVDDENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEDAK
Ga0209596_100159625	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMAVKTIAQALRMSRGTVSERAKRAGMTRHYITEAEARLLFKNRIGGVAK
Ga0209596_100159630	F034845	AGGAGG	MTASRTKYWREYNRRNAAKKREQHAAFRERNKAKIAEGKRAARAAGKFAPRKVSAIGAVKPTVAKPSTDEGKAEAMLTLREKFAAFRAKRAEGRE
Ga0209596_100159632	F017799	GGA	MDTNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELRKLIYNPVGDLS
Ga0209596_100159633	F011740	N/A	VNSITAADWVTNCVATYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDEPERGDEA
Ga0209596_10015965	F014606	AGCAG	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTAESGTYLIDDLFDTGSAAVEAAVLTDVTLGGQCRDLHLTSVDYVIEPDEDRRFGTARHTFNCIYLTTD