Scaffold Ga0209596_1001476

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001476
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20247
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006215	Metagenome / Metatranscriptome	378	Y
F016262	Metagenome / Metatranscriptome	248	Y
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F028461	Metagenome	191	N
F049572	Metagenome / Metatranscriptome	146	N
F086850	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100147617	F023325	N/A	MRLVSPLIEYLQVSGKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDTILNSKNNTITAIEVVDNVTNTIAPTVPATDPLSPTQAAQGFFYFCNAKREIISYVPLYSLIRRLNAGKVQFLDSPDPISWQNCFIQFNSLTTAITTANSVWLRVTYSPVEN
Ga0209596_100147620	F016262	N/A	MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPSLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYLSDDTSGDSGEMDY
Ga0209596_100147634	F025232	N/A	MENVNEKILEDYRLVVTRLDLMKAEVDEVNRANFKLRKAFSELLDIYQEELLRRESTEDFNDVAYYWCDKAGILD
Ga0209596_100147639	F028461	N/A	MRKKTNAATYYKNPALQESIIRYYKEKQLNFVVKHSNYNTQIIGTEATLKFIQTEHPIRVFVAYNKIVKDLKESPKTVEILQGEWSTDNFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLITQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTNGKAENWELKEGFYTNIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTISKKKLAEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDKNLARNFTKVLQQLENA
Ga0209596_10014764	F086850	GAG	METNKTLKFGIAEYSKPTPKKLRRLGDGLLLASSLITNELMVTNPAIASITLIVGTIGKFLTNFFSAE
Ga0209596_100147641	F049572	N/A	METNNQLVRANDVNATITPEMLEASANLKQLKAAINLSPEYIELVKPGESFRGIFWGFSEIQVNDQVTGEQRTIPAAAFLVDKCIRINAGVALVGECKKSGIDKGTPVEVTFKEKKGNLKIYSLTLLA
Ga0209596_10014765	F006215	N/A	MQSINGYQYNTEQEAINARESCDSYYGIPVNPNDVTQNWVDYQFAELNTPQFYYIVYDDSLLPVLGTPTEFEVVTPPFPPVN