Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1001476 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20247 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.29%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006215 | Metagenome / Metatranscriptome | 378 | Y |
F016262 | Metagenome / Metatranscriptome | 248 | Y |
F023325 | Metagenome / Metatranscriptome | 210 | N |
F025232 | Metagenome / Metatranscriptome | 202 | Y |
F028461 | Metagenome | 191 | N |
F049572 | Metagenome / Metatranscriptome | 146 | N |
F086850 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100147617 | F023325 | N/A | MRLVSPLIEYLQVSGKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDTILNSKNNTITAIEVVDNVTNTIAPTVPATDPLSPTQAAQGFFYFCNAKREIISYVPLYSLIRRLNAGKVQFLDSPDPISWQNCFIQFNSLTTAITTANSVWLRVTYSPVEN |
Ga0209596_100147620 | F016262 | N/A | MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPSLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYLSDDTSGDSGEMDY |
Ga0209596_100147634 | F025232 | N/A | MENVNEKILEDYRLVVTRLDLMKAEVDEVNRANFKLRKAFSELLDIYQEELLRRESTEDFNDVAYYWCDKAGILD |
Ga0209596_100147639 | F028461 | N/A | MRKKTNAATYYKNPALQESIIRYYKEKQLNFVVKHSNYNTQIIGTEATLKFIQTEHPIRVFVAYNKIVKDLKESPKTVEILQGEWSTDNFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLITQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTNGKAENWELKEGFYTNIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTISKKKLAEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDKNLARNFTKVLQQLENA |
Ga0209596_10014764 | F086850 | GAG | METNKTLKFGIAEYSKPTPKKLRRLGDGLLLASSLITNELMVTNPAIASITLIVGTIGKFLTNFFSAE |
Ga0209596_100147641 | F049572 | N/A | METNNQLVRANDVNATITPEMLEASANLKQLKAAINLSPEYIELVKPGESFRGIFWGFSEIQVNDQVTGEQRTIPAAAFLVDKCIRINAGVALVGECKKSGIDKGTPVEVTFKEKKGNLKIYSLTLLA |
Ga0209596_10014765 | F006215 | N/A | MQSINGYQYNTEQEAINARESCDSYYGIPVNPNDVTQNWVDYQFAELNTPQFYYIVYDDSLLPVLGTPTEFEVVTPPFPPVN |
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